SlideShare a Scribd company logo
1 of 6
Why multiple scoring functions can improve docking performance Testing hypotheses for rescoring success Noel O’Boyle , John Liebeschuetz, Jason Cole CCDC
Rescoring Docking with Scoring Function A Poses and associated scores Same poses but with new scores Rescoring with Scoring Function B Protein structure Molecular library Docking
How can rescoring improve virtual screening results? ,[object Object],[object Object],[object Object]
How can rescoring improve virtual screening results? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
How can rescoring improve virtual screening results? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Why multiple scoring functions can improve docking performance Testing hypotheses for rescoring success Noel O’Boyle , John Liebeschuetz, Jason Cole CCDC

More Related Content

Viewers also liked

Open Babel 2.3 Quick Reference
Open Babel 2.3 Quick ReferenceOpen Babel 2.3 Quick Reference
Open Babel 2.3 Quick Referencebaoilleach
 
De novo design of molecular wires with optimal properties for solar energy co...
De novo design of molecular wires with optimal properties for solar energy co...De novo design of molecular wires with optimal properties for solar energy co...
De novo design of molecular wires with optimal properties for solar energy co...baoilleach
 
Towards Practical Molecular Devices
Towards Practical Molecular DevicesTowards Practical Molecular Devices
Towards Practical Molecular Devicesbaoilleach
 
What's New and Cooking in Open Babel 2.3.2
What's New and Cooking in Open Babel 2.3.2What's New and Cooking in Open Babel 2.3.2
What's New and Cooking in Open Babel 2.3.2baoilleach
 
Improving the quality of chemical databases with community-developed tools (a...
Improving the quality of chemical databases with community-developed tools (a...Improving the quality of chemical databases with community-developed tools (a...
Improving the quality of chemical databases with community-developed tools (a...baoilleach
 
Local Vibrational Modes
Local Vibrational ModesLocal Vibrational Modes
Local Vibrational ModesDani Setiawan
 
Cheminformatics
CheminformaticsCheminformatics
Cheminformaticsbaoilleach
 

Viewers also liked (10)

Open Babel 2.3 Quick Reference
Open Babel 2.3 Quick ReferenceOpen Babel 2.3 Quick Reference
Open Babel 2.3 Quick Reference
 
De novo design of molecular wires with optimal properties for solar energy co...
De novo design of molecular wires with optimal properties for solar energy co...De novo design of molecular wires with optimal properties for solar energy co...
De novo design of molecular wires with optimal properties for solar energy co...
 
Towards Practical Molecular Devices
Towards Practical Molecular DevicesTowards Practical Molecular Devices
Towards Practical Molecular Devices
 
Treasure of Prayers
Treasure of PrayersTreasure of Prayers
Treasure of Prayers
 
NBO Analysis
NBO AnalysisNBO Analysis
NBO Analysis
 
What's New and Cooking in Open Babel 2.3.2
What's New and Cooking in Open Babel 2.3.2What's New and Cooking in Open Babel 2.3.2
What's New and Cooking in Open Babel 2.3.2
 
Improving the quality of chemical databases with community-developed tools (a...
Improving the quality of chemical databases with community-developed tools (a...Improving the quality of chemical databases with community-developed tools (a...
Improving the quality of chemical databases with community-developed tools (a...
 
Periodicity2
Periodicity2Periodicity2
Periodicity2
 
Local Vibrational Modes
Local Vibrational ModesLocal Vibrational Modes
Local Vibrational Modes
 
Cheminformatics
CheminformaticsCheminformatics
Cheminformatics
 

More from baoilleach

We need to talk about Kekulization, Aromaticity and SMILES
We need to talk about Kekulization, Aromaticity and SMILESWe need to talk about Kekulization, Aromaticity and SMILES
We need to talk about Kekulization, Aromaticity and SMILESbaoilleach
 
Open Babel project overview
Open Babel project overviewOpen Babel project overview
Open Babel project overviewbaoilleach
 
So I have an SD File... What do I do next?
So I have an SD File... What do I do next?So I have an SD File... What do I do next?
So I have an SD File... What do I do next?baoilleach
 
Chemistrify the Web
Chemistrify the WebChemistrify the Web
Chemistrify the Webbaoilleach
 
Universal Smiles: Finally a canonical SMILES string
Universal Smiles: Finally a canonical SMILES stringUniversal Smiles: Finally a canonical SMILES string
Universal Smiles: Finally a canonical SMILES stringbaoilleach
 
Intro to Open Babel
Intro to Open BabelIntro to Open Babel
Intro to Open Babelbaoilleach
 
Protein-ligand docking
Protein-ligand dockingProtein-ligand docking
Protein-ligand dockingbaoilleach
 
Making the most of a QM calculation
Making the most of a QM calculationMaking the most of a QM calculation
Making the most of a QM calculationbaoilleach
 
Data Analysis in QSAR
Data Analysis in QSARData Analysis in QSAR
Data Analysis in QSARbaoilleach
 
Large-scale computational design and selection of polymers for solar cells
Large-scale computational design and selection of polymers for solar cellsLarge-scale computational design and selection of polymers for solar cells
Large-scale computational design and selection of polymers for solar cellsbaoilleach
 
My Open Access papers
My Open Access papersMy Open Access papers
My Open Access papersbaoilleach
 
Density functional theory calculations on Ruthenium polypyridyl complexes inc...
Density functional theory calculations on Ruthenium polypyridyl complexes inc...Density functional theory calculations on Ruthenium polypyridyl complexes inc...
Density functional theory calculations on Ruthenium polypyridyl complexes inc...baoilleach
 
Application of Density Functional Theory to Scanning Tunneling Microscopy
Application of Density Functional Theory to Scanning Tunneling MicroscopyApplication of Density Functional Theory to Scanning Tunneling Microscopy
Application of Density Functional Theory to Scanning Tunneling Microscopybaoilleach
 
The Blue Obelisk community
The Blue Obelisk communityThe Blue Obelisk community
The Blue Obelisk communitybaoilleach
 
Goslar2010 poster
Goslar2010 posterGoslar2010 poster
Goslar2010 posterbaoilleach
 
Classification of Enzyme Reaction Mechanisms
Classification of Enzyme Reaction MechanismsClassification of Enzyme Reaction Mechanisms
Classification of Enzyme Reaction Mechanismsbaoilleach
 
Digging deep for GOLD: How buriedness may be used to discriminate between act...
Digging deep for GOLD: How buriedness may be used to discriminate between act...Digging deep for GOLD: How buriedness may be used to discriminate between act...
Digging deep for GOLD: How buriedness may be used to discriminate between act...baoilleach
 
cclib - parsers and algorithms for computational chemists
cclib - parsers and algorithms for computational chemistscclib - parsers and algorithms for computational chemists
cclib - parsers and algorithms for computational chemistsbaoilleach
 
MACiE - A Database for Classification of Enzyme Reaction Mechanisms
MACiE - A Database for Classification of Enzyme Reaction MechanismsMACiE - A Database for Classification of Enzyme Reaction Mechanisms
MACiE - A Database for Classification of Enzyme Reaction Mechanismsbaoilleach
 
Python for Chemistry
Python for ChemistryPython for Chemistry
Python for Chemistrybaoilleach
 

More from baoilleach (20)

We need to talk about Kekulization, Aromaticity and SMILES
We need to talk about Kekulization, Aromaticity and SMILESWe need to talk about Kekulization, Aromaticity and SMILES
We need to talk about Kekulization, Aromaticity and SMILES
 
Open Babel project overview
Open Babel project overviewOpen Babel project overview
Open Babel project overview
 
So I have an SD File... What do I do next?
So I have an SD File... What do I do next?So I have an SD File... What do I do next?
So I have an SD File... What do I do next?
 
Chemistrify the Web
Chemistrify the WebChemistrify the Web
Chemistrify the Web
 
Universal Smiles: Finally a canonical SMILES string
Universal Smiles: Finally a canonical SMILES stringUniversal Smiles: Finally a canonical SMILES string
Universal Smiles: Finally a canonical SMILES string
 
Intro to Open Babel
Intro to Open BabelIntro to Open Babel
Intro to Open Babel
 
Protein-ligand docking
Protein-ligand dockingProtein-ligand docking
Protein-ligand docking
 
Making the most of a QM calculation
Making the most of a QM calculationMaking the most of a QM calculation
Making the most of a QM calculation
 
Data Analysis in QSAR
Data Analysis in QSARData Analysis in QSAR
Data Analysis in QSAR
 
Large-scale computational design and selection of polymers for solar cells
Large-scale computational design and selection of polymers for solar cellsLarge-scale computational design and selection of polymers for solar cells
Large-scale computational design and selection of polymers for solar cells
 
My Open Access papers
My Open Access papersMy Open Access papers
My Open Access papers
 
Density functional theory calculations on Ruthenium polypyridyl complexes inc...
Density functional theory calculations on Ruthenium polypyridyl complexes inc...Density functional theory calculations on Ruthenium polypyridyl complexes inc...
Density functional theory calculations on Ruthenium polypyridyl complexes inc...
 
Application of Density Functional Theory to Scanning Tunneling Microscopy
Application of Density Functional Theory to Scanning Tunneling MicroscopyApplication of Density Functional Theory to Scanning Tunneling Microscopy
Application of Density Functional Theory to Scanning Tunneling Microscopy
 
The Blue Obelisk community
The Blue Obelisk communityThe Blue Obelisk community
The Blue Obelisk community
 
Goslar2010 poster
Goslar2010 posterGoslar2010 poster
Goslar2010 poster
 
Classification of Enzyme Reaction Mechanisms
Classification of Enzyme Reaction MechanismsClassification of Enzyme Reaction Mechanisms
Classification of Enzyme Reaction Mechanisms
 
Digging deep for GOLD: How buriedness may be used to discriminate between act...
Digging deep for GOLD: How buriedness may be used to discriminate between act...Digging deep for GOLD: How buriedness may be used to discriminate between act...
Digging deep for GOLD: How buriedness may be used to discriminate between act...
 
cclib - parsers and algorithms for computational chemists
cclib - parsers and algorithms for computational chemistscclib - parsers and algorithms for computational chemists
cclib - parsers and algorithms for computational chemists
 
MACiE - A Database for Classification of Enzyme Reaction Mechanisms
MACiE - A Database for Classification of Enzyme Reaction MechanismsMACiE - A Database for Classification of Enzyme Reaction Mechanisms
MACiE - A Database for Classification of Enzyme Reaction Mechanisms
 
Python for Chemistry
Python for ChemistryPython for Chemistry
Python for Chemistry
 

Recently uploaded

ECONOMIC CONTEXT - PAPER 1 Q3: NEWSPAPERS.pptx
ECONOMIC CONTEXT - PAPER 1 Q3: NEWSPAPERS.pptxECONOMIC CONTEXT - PAPER 1 Q3: NEWSPAPERS.pptx
ECONOMIC CONTEXT - PAPER 1 Q3: NEWSPAPERS.pptxiammrhaywood
 
Painted Grey Ware.pptx, PGW Culture of India
Painted Grey Ware.pptx, PGW Culture of IndiaPainted Grey Ware.pptx, PGW Culture of India
Painted Grey Ware.pptx, PGW Culture of IndiaVirag Sontakke
 
Hierarchy of management that covers different levels of management
Hierarchy of management that covers different levels of managementHierarchy of management that covers different levels of management
Hierarchy of management that covers different levels of managementmkooblal
 
Organic Name Reactions for the students and aspirants of Chemistry12th.pptx
Organic Name Reactions  for the students and aspirants of Chemistry12th.pptxOrganic Name Reactions  for the students and aspirants of Chemistry12th.pptx
Organic Name Reactions for the students and aspirants of Chemistry12th.pptxVS Mahajan Coaching Centre
 
Capitol Tech U Doctoral Presentation - April 2024.pptx
Capitol Tech U Doctoral Presentation - April 2024.pptxCapitol Tech U Doctoral Presentation - April 2024.pptx
Capitol Tech U Doctoral Presentation - April 2024.pptxCapitolTechU
 
Incoming and Outgoing Shipments in 1 STEP Using Odoo 17
Incoming and Outgoing Shipments in 1 STEP Using Odoo 17Incoming and Outgoing Shipments in 1 STEP Using Odoo 17
Incoming and Outgoing Shipments in 1 STEP Using Odoo 17Celine George
 
Crayon Activity Handout For the Crayon A
Crayon Activity Handout For the Crayon ACrayon Activity Handout For the Crayon A
Crayon Activity Handout For the Crayon AUnboundStockton
 
Full Stack Web Development Course for Beginners
Full Stack Web Development Course  for BeginnersFull Stack Web Development Course  for Beginners
Full Stack Web Development Course for BeginnersSabitha Banu
 
Pharmacognosy Flower 3. Compositae 2023.pdf
Pharmacognosy Flower 3. Compositae 2023.pdfPharmacognosy Flower 3. Compositae 2023.pdf
Pharmacognosy Flower 3. Compositae 2023.pdfMahmoud M. Sallam
 
History Class XII Ch. 3 Kinship, Caste and Class (1).pptx
History Class XII Ch. 3 Kinship, Caste and Class (1).pptxHistory Class XII Ch. 3 Kinship, Caste and Class (1).pptx
History Class XII Ch. 3 Kinship, Caste and Class (1).pptxsocialsciencegdgrohi
 
KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...
KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...
KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...M56BOOKSTORE PRODUCT/SERVICE
 
Software Engineering Methodologies (overview)
Software Engineering Methodologies (overview)Software Engineering Methodologies (overview)
Software Engineering Methodologies (overview)eniolaolutunde
 
Framing an Appropriate Research Question 6b9b26d93da94caf993c038d9efcdedb.pdf
Framing an Appropriate Research Question 6b9b26d93da94caf993c038d9efcdedb.pdfFraming an Appropriate Research Question 6b9b26d93da94caf993c038d9efcdedb.pdf
Framing an Appropriate Research Question 6b9b26d93da94caf993c038d9efcdedb.pdfUjwalaBharambe
 
How to Make a Pirate ship Primary Education.pptx
How to Make a Pirate ship Primary Education.pptxHow to Make a Pirate ship Primary Education.pptx
How to Make a Pirate ship Primary Education.pptxmanuelaromero2013
 
MARGINALIZATION (Different learners in Marginalized Group
MARGINALIZATION (Different learners in Marginalized GroupMARGINALIZATION (Different learners in Marginalized Group
MARGINALIZATION (Different learners in Marginalized GroupJonathanParaisoCruz
 
Earth Day Presentation wow hello nice great
Earth Day Presentation wow hello nice greatEarth Day Presentation wow hello nice great
Earth Day Presentation wow hello nice greatYousafMalik24
 

Recently uploaded (20)

ECONOMIC CONTEXT - PAPER 1 Q3: NEWSPAPERS.pptx
ECONOMIC CONTEXT - PAPER 1 Q3: NEWSPAPERS.pptxECONOMIC CONTEXT - PAPER 1 Q3: NEWSPAPERS.pptx
ECONOMIC CONTEXT - PAPER 1 Q3: NEWSPAPERS.pptx
 
Painted Grey Ware.pptx, PGW Culture of India
Painted Grey Ware.pptx, PGW Culture of IndiaPainted Grey Ware.pptx, PGW Culture of India
Painted Grey Ware.pptx, PGW Culture of India
 
Hierarchy of management that covers different levels of management
Hierarchy of management that covers different levels of managementHierarchy of management that covers different levels of management
Hierarchy of management that covers different levels of management
 
Organic Name Reactions for the students and aspirants of Chemistry12th.pptx
Organic Name Reactions  for the students and aspirants of Chemistry12th.pptxOrganic Name Reactions  for the students and aspirants of Chemistry12th.pptx
Organic Name Reactions for the students and aspirants of Chemistry12th.pptx
 
Capitol Tech U Doctoral Presentation - April 2024.pptx
Capitol Tech U Doctoral Presentation - April 2024.pptxCapitol Tech U Doctoral Presentation - April 2024.pptx
Capitol Tech U Doctoral Presentation - April 2024.pptx
 
9953330565 Low Rate Call Girls In Rohini Delhi NCR
9953330565 Low Rate Call Girls In Rohini  Delhi NCR9953330565 Low Rate Call Girls In Rohini  Delhi NCR
9953330565 Low Rate Call Girls In Rohini Delhi NCR
 
Incoming and Outgoing Shipments in 1 STEP Using Odoo 17
Incoming and Outgoing Shipments in 1 STEP Using Odoo 17Incoming and Outgoing Shipments in 1 STEP Using Odoo 17
Incoming and Outgoing Shipments in 1 STEP Using Odoo 17
 
Crayon Activity Handout For the Crayon A
Crayon Activity Handout For the Crayon ACrayon Activity Handout For the Crayon A
Crayon Activity Handout For the Crayon A
 
Full Stack Web Development Course for Beginners
Full Stack Web Development Course  for BeginnersFull Stack Web Development Course  for Beginners
Full Stack Web Development Course for Beginners
 
Pharmacognosy Flower 3. Compositae 2023.pdf
Pharmacognosy Flower 3. Compositae 2023.pdfPharmacognosy Flower 3. Compositae 2023.pdf
Pharmacognosy Flower 3. Compositae 2023.pdf
 
History Class XII Ch. 3 Kinship, Caste and Class (1).pptx
History Class XII Ch. 3 Kinship, Caste and Class (1).pptxHistory Class XII Ch. 3 Kinship, Caste and Class (1).pptx
History Class XII Ch. 3 Kinship, Caste and Class (1).pptx
 
KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...
KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...
KSHARA STURA .pptx---KSHARA KARMA THERAPY (CAUSTIC THERAPY)————IMP.OF KSHARA ...
 
TataKelola dan KamSiber Kecerdasan Buatan v022.pdf
TataKelola dan KamSiber Kecerdasan Buatan v022.pdfTataKelola dan KamSiber Kecerdasan Buatan v022.pdf
TataKelola dan KamSiber Kecerdasan Buatan v022.pdf
 
Software Engineering Methodologies (overview)
Software Engineering Methodologies (overview)Software Engineering Methodologies (overview)
Software Engineering Methodologies (overview)
 
Framing an Appropriate Research Question 6b9b26d93da94caf993c038d9efcdedb.pdf
Framing an Appropriate Research Question 6b9b26d93da94caf993c038d9efcdedb.pdfFraming an Appropriate Research Question 6b9b26d93da94caf993c038d9efcdedb.pdf
Framing an Appropriate Research Question 6b9b26d93da94caf993c038d9efcdedb.pdf
 
How to Make a Pirate ship Primary Education.pptx
How to Make a Pirate ship Primary Education.pptxHow to Make a Pirate ship Primary Education.pptx
How to Make a Pirate ship Primary Education.pptx
 
ESSENTIAL of (CS/IT/IS) class 06 (database)
ESSENTIAL of (CS/IT/IS) class 06 (database)ESSENTIAL of (CS/IT/IS) class 06 (database)
ESSENTIAL of (CS/IT/IS) class 06 (database)
 
MARGINALIZATION (Different learners in Marginalized Group
MARGINALIZATION (Different learners in Marginalized GroupMARGINALIZATION (Different learners in Marginalized Group
MARGINALIZATION (Different learners in Marginalized Group
 
Earth Day Presentation wow hello nice great
Earth Day Presentation wow hello nice greatEarth Day Presentation wow hello nice great
Earth Day Presentation wow hello nice great
 
Model Call Girl in Tilak Nagar Delhi reach out to us at 🔝9953056974🔝
Model Call Girl in Tilak Nagar Delhi reach out to us at 🔝9953056974🔝Model Call Girl in Tilak Nagar Delhi reach out to us at 🔝9953056974🔝
Model Call Girl in Tilak Nagar Delhi reach out to us at 🔝9953056974🔝
 

Why multiple scoring functions can improve docking performance - Testing hypotheses for rescoring success.

  • 1. Why multiple scoring functions can improve docking performance Testing hypotheses for rescoring success Noel O’Boyle , John Liebeschuetz, Jason Cole CCDC
  • 2. Rescoring Docking with Scoring Function A Poses and associated scores Same poses but with new scores Rescoring with Scoring Function B Protein structure Molecular library Docking
  • 3.
  • 4.
  • 5.
  • 6. Why multiple scoring functions can improve docking performance Testing hypotheses for rescoring success Noel O’Boyle , John Liebeschuetz, Jason Cole CCDC